Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16135

Metabolite ID
P16135
Deionized mass
493.2067 Da
Average m/z
494.2127
Average RT
12.1831
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G164700 hypothetical protein NA 3Chr05:35543931–35549196 (-)3.356e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.923e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)6.648e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.475e-12
Glyma.05G123300 hypothetical protein NA 1Chr05:31696132–31700404 (+)4.849e-13
Glyma.05G123500 hypothetical protein AT3G48750:CDC2:cell division control 2 1Chr05:31718748–31724784 (-)2.168e-13
Glyma.05G124100 hypothetical protein AT5G44450:AT5G44450:alpha amino-terminal protein methyltransferase 1Chr05:31769844–31775954 (-)8.267e-11
Glyma.05G124200 hypothetical protein AT4G20790:AT4G20790:Leucine-rich repeat protein kinase family protein 1Chr05:31776906–31778608 (-)2.319e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.632e-14
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)2.022e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.46e-19
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.843e-21
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.843e-21
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.361e-23
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.857e-22
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.857e-22
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.857e-22
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)1.591e-15
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.085e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)7.741e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.994e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.757e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.757e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.888e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.992e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)9.439e-11
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)6.024e-12
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)6.024e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)6.025e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.72e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.72e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.72e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.72e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.853e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)5.597e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.882e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.882e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.882e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.023e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.286e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.035e-12
Glyma.18G282800 hypothetical protein AT2G31660:SAD2:ARM repeat superfamily protein 1Chr18:56377928–56395985 (+)4.647e-11
Glyma.20G053000 hypothetical protein NA 1Chr20:11983566–11990328 (-)4.602e-11
Glyma.20G053700 hypothetical protein NA 1Chr20:12341598–12348808 (+)4.602e-11
Glyma.20G055400 hypothetical protein NA 1Chr20:13199672–13205467 (+)4.602e-11
Glyma.20G056500 hypothetical protein AT1G35220:AT1G35220:FAM91 carboxy-terminus protein 1Chr20:14773334–14777681 (-)4.602e-11
Glyma.20G056800 hypothetical protein AT2G32970:AT2G32970:G1/S-specific cyclin-E protein 1Chr20:15720600–15729831 (-)4.602e-11
Glyma.20G057300 hypothetical protein NA 1Chr20:16424783–16426060 (-)4.602e-11
Glyma.20G057500 hypothetical protein NA 1Chr20:16724289–16728840 (+)4.602e-11
Glyma.20G058000 hypothetical protein AT1G76490:HMG1:hydroxy methylglutaryl CoA reductase 1 1Chr20:17037758–17043212 (-)4.602e-11
Glyma.20G059300 hypothetical protein NA 1Chr20:17987356–17987736 (-)4.602e-11
Glyma.20G098100 hypothetical protein AT1G56420:AT1G56420:antigenic heat-stable protein 1Chr20:34134555–34139100 (-)1.969e-11
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)4.207e-13
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)3.707e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)3.185e-12