Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16113

Metabolite ID
P16113
Deionized mass
418.1383 Da
Average m/z
419.1474
Average RT
12.1765
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.99e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.768e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.442e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.442e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)8.587e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.018e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.731e-16
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)4.82e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.737e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.893e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.793e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.793e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.385e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.156e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.156e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.156e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.94e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)9.705e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)7.591e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.733e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.163e-14
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.004e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.004e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.004e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.938e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.99e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.989e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.127e-16
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.768e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.768e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.763e-12
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)1.55e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.699e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.315e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.048e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.048e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.469e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.469e-14
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.698e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.187e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.768e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.887e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.263e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.887e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.887e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.945e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.359e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)6.343e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.873e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.873e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.262e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)7.356e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.065e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.772e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)2.9e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.931e-12
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)6.383e-12