Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16078

Metabolite ID
P16078
Deionized mass
328.1983 Da
Average m/z
329.2045
Average RT
12.1687
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)8.837e-20
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.024e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.902e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.902e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.687e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)4.182e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)3.659e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.062e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.942e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.942e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.839e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)8.467e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.668e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.907e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)4.318e-11
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)7.334e-11
Glyma.07G070200 hypothetical protein AT1G20930:CDKB2;2:cyclin-dependent kinase B2;2 1Chr07:6362067–6364280 (+)2.33e-11
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 1Chr07:6364435–6372387 (-)6.446e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.482e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.153e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.153e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.651e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)8.535e-11
Glyma.11G109900 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr11:8378708–8386493 (-)1.797e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.287e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.287e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.192e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.192e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)8.328e-12
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)1.759e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.149e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.149e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.526e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.526e-11
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.572e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.902e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.902e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.755e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.693e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.286e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.456e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.985e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.456e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.456e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)2.303e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.263e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.607e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.718e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.718e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.035e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.035e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.687e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)5.042e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)4.103e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.081e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.929e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.715e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.623e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.117e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.624e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.432e-14