Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15904

Metabolite ID
P15904
Deionized mass
204.1635 Da
Average m/z
205.1687
Average RT
12.1260
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.097e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.918e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.642e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.638e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)5.313e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)2.486e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.426e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)9.116e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)1.08e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)3.581e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.275e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.601e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.362e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.778e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.617e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.941e-17
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.941e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.295e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.375e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)4.512e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.551e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.404e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.488e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.404e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.404e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.488e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.828e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.193e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.914e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.914e-12
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)3.478e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)2.127e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.01e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.097e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.129e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.107e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.786e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.169e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.266e-14
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.919e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.078e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.078e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.078e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.453e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.638e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)6.094e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)3.142e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.376e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.342e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)2.31e-13
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)1.014e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)1.678e-11
Glyma.16G042100 hypothetical protein NA 1Chr16:3931670–3933390 (-)3.649e-11
Glyma.16G042200 hypothetical protein AT2G23840:AT2G23840:HNH endonuclease 1Chr16:3933842–3940818 (+)3.649e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.763e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.068e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)7.057e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)7.057e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)5.146e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.115e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.115e-12