Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15845

Metabolite ID
P15845
Deionized mass
294.0747 Da
Average m/z
295.0816
Average RT
12.1091
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
123
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

123 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)1.204e-14
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)3.054e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.345e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.971e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)6.227e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.227e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.716e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)2.005e-15
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 2Chr05:41274513–41279615 (-)7.035e-19
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)2.528e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)5.993e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.659e-20
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.985e-16
Glyma.13G053000 hypothetical protein AT3G02230:RGP1:reversibly glycosylated polypeptide 1 2Chr13:15046821–15050021 (+)5.219e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.071e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.071e-11
Glyma.16G050900 COL16 NA 2Chr16:4874634–4878624 (+)3.019e-12
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)6.921e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)4.189e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.003e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 2Chr19:472201–476152 (-)2.469e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.345e-15
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.413e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.413e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)3.434e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)5.798e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.533e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.598e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.285e-15
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.898e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)6.014e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.035e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)8.189e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.117e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.748e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.064e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.064e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.064e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.932e-24
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.435e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.115e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.47e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.47e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.994e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.403e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.343e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.242e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.177e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.242e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.242e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.177e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.501e-13
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)2.355e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.513e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.1e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.1e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.225e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.014e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.415e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.071e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.474e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)6.636e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)9.653e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.447e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.447e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.447e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.92e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.528e-16
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.678e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.057e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.304e-17
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.971e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.022e-11
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)2.219e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.071e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.071e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.103e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.725e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.572e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.725e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.725e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.112e-14
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.724e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.15e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.311e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.227e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.227e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.07e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.653e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.613e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.991e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.916e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)1.964e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)2.835e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)3.711e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)6.723e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)5.013e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)5.014e-12
Glyma.16G167800 hypothetical protein AT1G03190:UVH6:RAD3-like DNA-binding helicase protein 1Chr16:32772162–32778480 (+)1.68e-11
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 1Chr16:33322352–33330062 (+)3.654e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.75e-17
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.364e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.205e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)2.117e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.715e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.005e-15
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.703e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.703e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)3.372e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.372e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.004e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.201e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)4.688e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)3.987e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)4.688e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)4.688e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.201e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.359e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.243e-18
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.779e-16
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.999e-23
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)9.819e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.217e-11