Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15569

Metabolite ID
P15569
Deionized mass
382.2329 Da
Average m/z
383.2411
Average RT
12.0376
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.851e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)8.375e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)7.961e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)6.188e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.434e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.378e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.073e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.851e-14
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)5.519e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.803e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.803e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.001e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)7.296e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.062e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.596e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.897e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.657e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.038e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.64e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.64e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.64e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.994e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)8.286e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.994e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.994e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)8.286e-12
Glyma.06G307900 hypothetical protein NA 1Chr06:49664901–49674729 (+)3.315e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.434e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.651e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)9.158e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.363e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.363e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.14e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.434e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.313e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.06e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)7.304e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.055e-16
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.055e-16
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.055e-16
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.128e-16
Glyma.13G204000 hypothetical protein AT3G12650:AT3G12650:uncharacterized protein 1Chr13:31799233–31800440 (+)2.36e-11
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)2.413e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)6.459e-14
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)6.459e-14
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.368e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.073e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)6.827e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.495e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.191e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)8.375e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)8.375e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)8.375e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)8.375e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.932e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.142e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.532e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.42e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.633e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.579e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.608e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.279e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.279e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.021e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.792e-11