Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15537

Metabolite ID
P15537
Deionized mass
650.1012 Da
Average m/z
651.1105
Average RT
12.0308
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
93
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

93 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G164700 hypothetical protein NA 4Chr05:35543931–35549196 (-)1.065e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.194e-11
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)2.086e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)6.065e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.299e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)3.73e-13
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)6.687e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.086e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)4.275e-13
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)4.275e-13
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)4.275e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.28e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.28e-14
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.604e-12
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)1.955e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.81e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.458e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)8.48e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.941e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.66e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)2.278e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)3.877e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.128e-14
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)6.598e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.909e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.937e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.775e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.775e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.118e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.861e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.861e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.861e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.717e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.371e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.02e-11
Glyma.05G164800 hypothetical protein NA 1Chr05:35549831–35557199 (-)2.987e-11
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)2.556e-12
Glyma.05G165300 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr05:35593651–35600917 (+)2.556e-12
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)2.556e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.195e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.195e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)6.601e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.102e-18
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.18e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.067e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.405e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.083e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.083e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.083e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.083e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.933e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.547e-15
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.547e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.91e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.91e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.91e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.91e-13
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)5.672e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.771e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.771e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.771e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.142e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)9.143e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.023e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.023e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.12e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.12e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.345e-11
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)2.002e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.486e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.191e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.449e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.783e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)7.447e-13
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)7.447e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.238e-13
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)6.441e-14
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)6.065e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.84e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)7.818e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.417e-12
Glyma.18G252000 hypothetical protein AT1G02100:SBI1:Leucine carboxyl methyltransferase 1Chr18:53874840–53885068 (-)4.365e-12
Glyma.18G252200 hypothetical protein NA 1Chr18:53899264–53899758 (+)4.825e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.775e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)5.944e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)5.785e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.464e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)9.464e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.393e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.393e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.542e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.784e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.872e-14