Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15393

Metabolite ID
P15393
Deionized mass
826.0782 Da
Average m/z
827.0935
Average RT
11.9976
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)9.128e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)7.603e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)9.488e-11
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)8.787e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.655e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.654e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.732e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.508e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.116e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)6.38e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.393e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.412e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.412e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.072e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.987e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.987e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.987e-14
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.418e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.947e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.047e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.047e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.047e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.479e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.348e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.174e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.895e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.895e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)3.413e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)1.871e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)3.414e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.22e-13
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)1.058e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.318e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.318e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.397e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.397e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.186e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.889e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)4.257e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)5.737e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)9.128e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)9.128e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)9.128e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)9.128e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.965e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)9.488e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)9.488e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.549e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.337e-13
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)2.313e-13
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)3.711e-11
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)8.526e-11
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)8.526e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.281e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.844e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.844e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.356e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.445e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.011e-12
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)8.493e-11