Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P14873

Metabolite ID
P14873
Deionized mass
244.1769 Da
Average m/z
245.1835
Average RT
11.8755
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G252700 hypothetical protein AT1G19640:JMT:jasmonic acid carboxyl methyltransferase 4Chr17:40688090–40693273 (-)1.169e-17
Glyma.17G252200 DFR2 AT5G42800:DFR:dihydroflavonol 4-reductase 3Chr17:40652090–40657097 (-)5.945e-11
Glyma.04G240900 hypothetical protein AT4G08350:GTA2:global transcription factor group A2__AT2G34210:AT2G34210:Transcription elongation factor Spt5 2Chr04:50913301–50922892 (-)1.169e-17
Glyma.08G311700 hypothetical protein AT2G31300:ARPC1B:actin-related protein C1B 2Chr08:43089153–43109679 (+)3.243e-18
Glyma.08G314600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 2Chr08:43456991–43462012 (+)2.982e-11
Glyma.17G251800 hypothetical protein NA 2Chr17:40633579–40636068 (+)5.945e-11
Glyma.18G024200 hypothetical protein NA 2Chr18:1784471–1789898 (+)9.875e-20
Glyma.18G027000 hypothetical protein AT5G05660:NFXL2:NF-X1-type zinc finger protein NFXL2 2Chr18:2024473–2032910 (-)8.5e-20
Glyma.02G055000 hypothetical protein AT3G50900:AT3G50900:uncharacterized protein 1Chr02:4974147–4975335 (-)5.468e-12
Glyma.02G055200 hypothetical protein AT4G36530:AT4G36530:alpha/beta-Hydrolases superfamily protein 1Chr02:4994240–4997499 (-)5.468e-12
Glyma.04G233800 hypothetical protein NA 1Chr04:50254605–50256074 (+)1.169e-17
Glyma.04G234000 hypothetical protein AT5G24314:PTAC7:plastid transcriptionally active7 1Chr04:50262859–50266987 (-)1.169e-17
Glyma.04G240600 hypothetical protein AT2G12480:SCPL43:serine carboxypeptidase-like 43__AT1G43780:scpl44:serine carboxypeptidase-like 44__AT5G42240:scpl42:se… 1Chr04:50888492–50892907 (+)1.169e-17
Glyma.04G241100 hypothetical protein AT3G21470:AT3G21470:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:50928362–50929413 (-)1.169e-17
Glyma.07G151800 hypothetical protein AT1G02850:BGLU11:beta glucosidase 11 1Chr07:18413249–18422359 (-)2.371e-11
Glyma.07G152300 hypothetical protein AT3G51820:G4:UbiA prenyltransferase family protein 1Chr07:18497825–18503298 (+)3.036e-11
Glyma.07G211300 hypothetical protein NA 1Chr07:38265217–38267289 (+)1.527e-34
Glyma.08G058000 hypothetical protein NA 1Chr08:4454491–4459719 (-)1.525e-13
Glyma.08G311000 hypothetical protein AT2G42810:PP5.2:protein phosphatase 5.2 1Chr08:43024475–43034674 (+)3.243e-18
Glyma.08G311100 hypothetical protein AT2G04865:AT2G04865:Aminotransferase-like, plant mobile domain family protein 1Chr08:43039932–43045124 (+)3.243e-18
Glyma.08G312700 hypothetical protein NA 1Chr08:43244677–43248271 (+)3.243e-18
Glyma.08G312800 hypothetical protein AT1G50900:GDC1:Ankyrin repeat family protein 1Chr08:43262568–43266162 (-)2.734e-13
Glyma.08G313100 hypothetical protein NA 1Chr08:43277839–43286856 (-)3.243e-18
Glyma.08G313200 hypothetical protein AT1G50890:AT1G50890:ARM repeat superfamily protein 1Chr08:43294812–43301383 (+)3.243e-18
Glyma.08G313400 hypothetical protein AT1G50840:POLGAMMA2:polymerase gamma 2 1Chr08:43321796–43333918 (-)3.243e-18
Glyma.08G314000 hypothetical protein NA 1Chr08:43413816–43414967 (-)2.982e-11
Glyma.08G314500 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr08:43450585–43455985 (+)2.982e-11
Glyma.08G314900 hypothetical protein AT5G45470:AT5G45470:transmembrane protein, putative (DUF594) 1Chr08:43485394–43491814 (-)3.243e-18
Glyma.17G249800 hypothetical protein NA 1Chr17:40484710–40486475 (+)1.169e-17
Glyma.17G251100 hypothetical protein NA 1Chr17:40588512–40593556 (-)1.169e-17
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)5.945e-11
Glyma.17G252400 hypothetical protein NA 1Chr17:40673190–40677184 (+)5.945e-11
Glyma.17G253000 hypothetical protein AT1G75370:AT1G75370:Sec14p-like phosphatidylinositol transfer family protein 1Chr17:40706746–40712323 (-)5.945e-11
Glyma.17G253100 hypothetical protein NA 1Chr17:40714543–40716836 (-)5.945e-11
Glyma.18G024300 hypothetical protein NA 1Chr18:1795058–1802363 (+)9.875e-20
Glyma.18G024600 hypothetical protein NA 1Chr18:1821793–1824932 (+)1.472e-13
Glyma.18G025000 hypothetical protein NA 1Chr18:1848906–1850152 (+)9.875e-20
Glyma.18G025500 hypothetical protein AT3G56040:UGP3:UDP-glucose pyrophosphorylase 3 1Chr18:1879117–1887759 (+)9.875e-20
Glyma.18G026500 hypothetical protein AT3G11180:AT3G11180:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein__AT3G55970:JRG21:jasmonate-… 1Chr18:1968643–1972655 (+)1.472e-13
Glyma.18G027400 CYP25 peptidyl-prolyl cis-trans isomerase CYP25 NA 1Chr18:2060386–2063284 (+)1.527e-34
Glyma.20G218900 hypothetical protein NA 1Chr20:45474504–45480917 (+)3.243e-18
Glyma.20G219500 hypothetical protein AT1G65650:UCH2:Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1__AT5G16310:UCH1:Peptidase C12, ubiquitin carboxyl… 1Chr20:45509569–45513436 (+)3.243e-18
Glyma.20G219600 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr20:45513819–45525287 (+)3.243e-18