Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13950

Metabolite ID
P13950
Deionized mass
495.0824 Da
Average m/z
496.0889
Average RT
11.6142
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)3.925e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)4.26e-12
Glyma.06G213600 hypothetical protein NA 2Chr06:21713618–21726865 (+)1.923e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.848e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.834e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.822e-12
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)8.444e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.182e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.276e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.424e-11
Glyma.06G203800 hypothetical protein NA 1Chr06:19090082–19094822 (-)6.82e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)1.276e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)1.923e-11
Glyma.06G212000 hypothetical protein NA 1Chr06:21249851–21261691 (+)1.923e-11
Glyma.06G212900 hypothetical protein NA 1Chr06:21420130–21421143 (-)1.923e-11
Glyma.06G213300 hypothetical protein NA 1Chr06:21548690–21565666 (-)1.923e-11
Glyma.06G213700 hypothetical protein NA 1Chr06:21727968–21730998 (+)1.924e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.336e-13
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.336e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.209e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)2.984e-11
Glyma.08G127000 hypothetical protein NA 1Chr08:9781692–9785219 (+)3.882e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)3.261e-12
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)3.261e-12
Glyma.08G142500 hypothetical protein NA 1Chr08:10848944–10850129 (+)1.829e-11
Glyma.08G142900 hypothetical protein AT2G21860:AT2G21860:violaxanthin de-epoxidase-like protein 1Chr08:10869437–10872439 (+)2.516e-13
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)9.318e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.334e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.152e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.339e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.339e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.615e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.515e-13
Glyma.15G068800 hypothetical protein NA 1Chr15:5240682–5245023 (+)1.908e-12
Glyma.15G069700 hypothetical protein AT1G11120:AT1G11120:CTTNBP 2 amino-terminal-like protein 1Chr15:5327863–5332137 (-)4.552e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.293e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.448e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)2.317e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.699e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.848e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.588e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.588e-13
Glyma.20G065100 hypothetical protein AT2G22330:CYP79B3:cytochrome P450, family 79, subfamily B, polypeptide 3 1Chr20:23009963–23012683 (+)4.003e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.096e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)8.138e-11