Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13879

Metabolite ID
P13879
Deionized mass
333.1246 Da
Average m/z
334.1317
Average RT
11.5909
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
104
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

104 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 4Chr08:9494946–9505931 (-)1.756e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.866e-11
Glyma.08G122200 hypothetical protein NA 3Chr08:9416766–9429995 (-)1.756e-15
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)4.735e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.756e-15
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)1.756e-15
Glyma.08G122600 hypothetical protein NA 2Chr08:9445153–9450502 (+)5.874e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 2Chr08:9452604–9458932 (+)1.756e-15
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 2Chr09:47254519–47261787 (-)6.225e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)9.765e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)9.763e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)9.765e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)6.606e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.993e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)6.032e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)8.139e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)9.989e-15
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)2.294e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)2.294e-11
Glyma.01G181000 hypothetical protein NA 1Chr01:51703710–51704994 (-)6.696e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)1.617e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.61e-11
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)1.709e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.196e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.594e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.971e-12
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)7.764e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.2e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)7.029e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.719e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.715e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.715e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.956e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.805e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.805e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.805e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.332e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.377e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.515e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)9.234e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.233e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.866e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.866e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)9.928e-11
Glyma.08G123400 hypothetical protein NA 1Chr08:9486565–9490448 (-)3.18e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.415e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.368e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.88e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.132e-11
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)6.225e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)4.853e-13
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)1.25e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.247e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.453e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)9.765e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)9.765e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)9.765e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)4.025e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)9.765e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)9.765e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.667e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.677e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.15e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.85e-13
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)5.713e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.531e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.531e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.531e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.795e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.316e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)8.596e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.421e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.506e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.856e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.856e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.402e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.415e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.79e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.31e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.989e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.31e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.31e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.796e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.458e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.458e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.882e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.882e-12
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)5.255e-12
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)6.102e-12
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)6.102e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.663e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.663e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)5.529e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)4.337e-11
Glyma.19G120200 hypothetical protein NA 1Chr19:37773951–37778723 (+)1.672e-11
Glyma.19G120300 hypothetical protein NA 1Chr19:37782534–37786674 (+)2.738e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.721e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.484e-12
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)1.468e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)8.149e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.036e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.16e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.733e-13
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)4.418e-11