Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13826

Metabolite ID
P13826
Deionized mass
518.1596 Da
Average m/z
519.1694
Average RT
11.5753
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G137600 hypothetical protein NA 3Chr16:29468438–29472890 (-)1.371e-20
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.043e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.043e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.806e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.405e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)7.123e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)3.813e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.767e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.767e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.758e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)8.104e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.29e-11
Glyma.04G124600 hypothetical protein NA 1Chr04:16329983–16332898 (-)8.125e-11
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)1.339e-11
Glyma.05G166400 hypothetical protein NA 1Chr05:35692494–35699192 (+)2.393e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.1e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)9.735e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)5.422e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)5.423e-11
Glyma.07G255200 hypothetical protein AT3G23540:AT3G23540:alpha/beta-Hydrolases superfamily protein__AT4G14290:AT4G14290:alpha/beta-Hydrolases superfamily pr… 1Chr07:43155622–43165663 (+)9.693e-11
Glyma.07G255400 hypothetical protein AT5G19010:MPK16:mitogen-activated protein kinase 16 1Chr07:43173504–43180366 (-)9.693e-11
Glyma.07G255900 hypothetical protein AT3G23600:AT3G23600:alpha/beta-Hydrolases superfamily protein 1Chr07:43214683–43218261 (-)9.693e-11
Glyma.07G256200 hypothetical protein AT3G23580:RNR2A:ribonucleotide reductase 2A 1Chr07:43228132–43232417 (+)9.693e-11
Glyma.07G257300 hypothetical protein AT3G06130:AT3G06130:Heavy metal transport/detoxification superfamily protein__AT5G19090:AT5G19090:Heavy metal transport… 1Chr07:43333980–43336527 (+)9.693e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.691e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)3.825e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)3.825e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.743e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.743e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.043e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)4.129e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.806e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.041e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.619e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.323e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.323e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.373e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.535e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.177e-11
Glyma.16G127400 hypothetical protein AT5G66200:ARO2:armadillo repeat only 2 1Chr16:27917182–27920446 (-)5.119e-11
Glyma.16G127500 hypothetical protein AT5G07090:AT5G07090:Ribosomal protein S4 (RPS4A) family protein 1Chr16:27942746–27945076 (-)3.437e-11
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)1.402e-14
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.21e-19
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.702e-14
Glyma.16G139400 hypothetical protein AT3G50870:MNP:GATA type zinc finger transcription factor family protein 1Chr16:29672011–29674023 (+)7.99e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.283e-20
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.428e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)7.123e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.336e-12
Glyma.18G213300 hypothetical protein AT5G43180:AT5G43180:transmembrane protein, putative (Protein of unknown function, DUF599) 1Chr18:50026808–50028261 (-)4.431e-13
Glyma.18G213400 hypothetical protein NA 1Chr18:50037003–50043647 (+)4.431e-13
Glyma.18G214000 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr18:50088148–50092969 (-)4.704e-13
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)6.938e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)5.212e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.502e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.502e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.777e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.677e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.703e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.021e-11