Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13650

Metabolite ID
P13650
Deionized mass
938.2662 Da
Average m/z
939.2698
Average RT
11.5109
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
111
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

111 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)6.656e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.801e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)2.807e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.807e-15
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.291e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.291e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.29e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.958e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.533e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.27e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.894e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)3.279e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.344e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.345e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)9.94e-12
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)6.354e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.263e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.32e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.025e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.783e-11
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)7.513e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.843e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.537e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.797e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.336e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.267e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.249e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.249e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)7.839e-15
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)7.269e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)7.269e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.133e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.373e-12
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)8.227e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)7.006e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)4.514e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)3.942e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)3.942e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)2.569e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)2.569e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)3.942e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)3.62e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)9.873e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.873e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.807e-15
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.807e-15
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.25e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.807e-15
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.104e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.447e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.447e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.657e-14
Glyma.08G328500 hypothetical protein NA 1Chr08:44634459–44636933 (-)1.607e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)8.765e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.176e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)9.894e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)4.69e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.603e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.603e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.244e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.291e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.291e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.291e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.291e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.291e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)6.099e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.973e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.973e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.973e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.973e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.93e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.322e-15
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)7.127e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.215e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.991e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.387e-12
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)3.647e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)6.255e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.171e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.171e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.172e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.861e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.44e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.078e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.078e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)5.307e-14
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.752e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.023e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.008e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.712e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.56e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.599e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.641e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.328e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.27e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.984e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.984e-13
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)4.676e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)4.676e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.213e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)4.687e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)3.621e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.51e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.51e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)7.371e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)4.764e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.872e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.673e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.352e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.276e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.946e-11