Overview Annotation GWAS Evidence Associated genes

P13596

Metabolite ID
P13596
Deionized mass
545.0406 Da
Average m/z
546.0472
Average RT
11.4927
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
3
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

3 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G267100 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein__AT3G60920:AT3G60920:beige/BEACH domain protein 2Chr09:48472157–48515619 (+)1.322e-11
Glyma.09G268300 hypothetical protein AT1G01950:ARK2:armadillo repeat kinesin 2 1Chr09:48581218–48593414 (+)5.167e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)2.194e-11