Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13506

Metabolite ID
P13506
Deionized mass
994.2266 Da
Average m/z
995.2309
Average RT
11.4644
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.595e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.351e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.055e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)1.968e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.015e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.015e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)7.506e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.428e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.577e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.481e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.644e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.61e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.31e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.389e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.158e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.659e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)8.536e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.401e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.274e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.318e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.132e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.055e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.055e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.055e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.055e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)2.9e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)5.275e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.868e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)5.677e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)8.667e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)8.667e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.325e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)9.098e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.796e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.274e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.274e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.274e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.274e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.849e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.53e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.549e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.483e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.483e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.127e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.127e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.893e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.893e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.163e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.163e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.015e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.777e-15
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.001e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.592e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.28e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.609e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.28e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.28e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.432e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.619e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.375e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.982e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.151e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.351e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.495e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.495e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.628e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.538e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.537e-12