Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13423

Metabolite ID
P13423
Deionized mass
480.1017 Da
Average m/z
481.1067
Average RT
11.4430
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.398e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)3.551e-11
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)3.716e-12
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)3.372e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)6.244e-12
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 2Chr19:38632803–38635633 (+)1.73e-12
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)4.346e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.778e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.778e-12
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)3.443e-13
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)6.272e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.691e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.026e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)5.091e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.823e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.448e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.338e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)7.763e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.911e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.637e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.985e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.985e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.986e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.901e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)6.784e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)4.841e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)5.224e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.612e-14
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.085e-14
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)7.394e-12
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)2.568e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.739e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.507e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.956e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.956e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.956e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.956e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.192e-12
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)2.86e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.091e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.685e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.782e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.782e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.782e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.782e-12
Glyma.11G060700 hypothetical protein NA 1Chr11:4569714–4571506 (+)9.941e-11
Glyma.11G061000 hypothetical protein AT4G37210:AT4G37210:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:4576441–4579697 (+)2.853e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)1.035e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.43e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.43e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.43e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)4.98e-11
Glyma.11G192600 hypothetical protein AT2G28200:AT2G28200:C2H2-type zinc finger family protein 1Chr11:26572944–26574724 (-)2.17e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.828e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.828e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.016e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.016e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.615e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.106e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)6.245e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)6.486e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.453e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.453e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)2.253e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.633e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.515e-13
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)2.682e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.053e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.9e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.9e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.489e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.489e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.701e-13
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.719e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.275e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.689e-15
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)8.16e-11