Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13392

Metabolite ID
P13392
Deionized mass
208.1077 Da
Average m/z
209.1142
Average RT
11.4354
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.043e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.521e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.85e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)6.864e-15
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)4.616e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.95e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.297e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.478e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.372e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.384e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.384e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.384e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.06e-12
Glyma.07G209600 hypothetical protein NA 1Chr07:38037644–38043272 (+)3.156e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.938e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.043e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.043e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.043e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.043e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.606e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.041e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)9.483e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)9.483e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)6.385e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)6.385e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.464e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.464e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.464e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.464e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.455e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.37e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.641e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.641e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.085e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.085e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.919e-11
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.201e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.599e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.599e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.599e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.599e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)5.82e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.022e-15
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.36e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.047e-14
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)7.946e-14
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.057e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.98e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.076e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.062e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.636e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.321e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.321e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)6.126e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.84e-14
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)2.319e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.777e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.29e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.156e-11