Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13243

Metabolite ID
P13243
Deionized mass
103.0624 Da
Average m/z
104.0697
Average RT
11.4005
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.63e-12
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)1.779e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)1.512e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.064e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.181e-11
Glyma.18G230900 hypothetical protein AT3G46210:AT3G46210:Ribosomal protein S5 domain 2-like superfamily protein 2Chr18:51956623–51961267 (+)7.366e-12
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 2Chr18:51979095–51987062 (-)1.654e-14
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)7.046e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)7.325e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.193e-12
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38601039–38606103 (+)6.192e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.232e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.993e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.166e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)8.386e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.022e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.964e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.964e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.964e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.077e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.385e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.429e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.631e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.631e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)3.269e-11
Glyma.07G072900 hypothetical protein NA 1Chr07:6636336–6643709 (+)6.147e-11
Glyma.07G073100 hypothetical protein NA 1Chr07:6656839–6661250 (-)4.117e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.273e-13
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)7.676e-13
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)1.32e-11
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)9.729e-11
Glyma.07G223600 hypothetical protein NA 1Chr07:40077049–40082294 (+)6.34e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.685e-15
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.377e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.181e-11
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)3.745e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)6.371e-13
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)2.678e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)2.678e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.245e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.568e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.245e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.245e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.375e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.641e-13
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)6.548e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)6.548e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)6.548e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)8.786e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)8.786e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)7.836e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)5.855e-13
Glyma.18G230600 hypothetical protein AT3G61250:MYB17:myb domain protein 17 1Chr18:51934101–51937216 (-)4.142e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)8.137e-15
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)2.715e-17
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.783e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.784e-11