P13009
Metabolite ID
P13009
Deionized mass
545.1969 Da
Average m/z
546.2064
Average RT
11.3272
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G210200 | hypothetical protein | NA | 3 | Chr16:36933402–36938940 (+) | 8.614e-11 | |
| Glyma.17G218600 | hypothetical protein | NA | 3 | Chr17:36975400–36982812 (-) | 1.191e-12 | |
| Glyma.18G100200 | hypothetical protein | NA | 3 | Chr18:10512806–10522231 (+) | 1.649e-14 | |
| Glyma.18G106600 | hypothetical protein | NA | 3 | Chr18:11947553–11951868 (+) | 1.141e-14 | |
| Glyma.09G042600 | hypothetical protein | AT5G49150:GEX2:gamete expressed 2 | 2 | Chr09:3636044–3644796 (-) | 7.631e-12 | |
| Glyma.09G274700 | hypothetical protein | NA | 2 | Chr09:49057465–49065986 (-) | 7.341e-11 | |
| Glyma.09G275800 | hypothetical protein | NA | 2 | Chr09:49116424–49122191 (-) | 7.341e-11 | |
| Glyma.09G276100 | hypothetical protein | AT2G38510:AT2G38510:MATE efflux family protein | 2 | Chr09:49139110–49143810 (-) | 7.341e-11 | |
| Glyma.13G183400 | hypothetical protein | NA | 2 | Chr13:29666942–29670201 (+) | 1.572e-12 | |
| Glyma.18G106300 | hypothetical protein | NA | 2 | Chr18:11900700–11905446 (-) | 1.962e-11 | |
| Glyma.01G120000 | hypothetical protein | NA | 1 | Chr01:41270985–41274854 (+) | 2.102e-11 | |
| Glyma.01G123900 | hypothetical protein | AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr01:42831758–42837350 (+) | 2.283e-11 | |
| Glyma.01G124100 | hypothetical protein | NA | 1 | Chr01:42886229–42892204 (-) | 5.004e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 1.138e-13 | |
| Glyma.03G124500 | hypothetical protein | NA | 1 | Chr03:33758928–33762195 (+) | 3.124e-11 | |
| Glyma.05G164700 | hypothetical protein | NA | 1 | Chr05:35543931–35549196 (-) | 4.204e-11 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 2.139e-15 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 8.435e-19 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 4.417e-15 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 8.341e-11 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 8.341e-11 | |
| Glyma.06G261900 | hypothetical protein | NA | 1 | Chr06:44875369–44879702 (-) | 4.177e-14 | |
| Glyma.06G313500 | hypothetical protein | NA | 1 | Chr06:50191600–50203098 (-) | 9.214e-11 | |
| Glyma.08G294900 | hypothetical protein | AT1G59720:CRR28:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr08:41002768–41005138 (-) | 9.608e-11 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 7.051e-11 | |
| Glyma.09G274900 | hypothetical protein | AT5G02280:AT5G02280:SNARE-like superfamily protein | 1 | Chr09:49069946–49073277 (-) | 7.341e-11 | |
| Glyma.09G275100 | hypothetical protein | AT3G08760:ATSIK:Protein kinase superfamily protein | 1 | Chr09:49079101–49084269 (-) | 7.341e-11 | |
| Glyma.09G275300 | hypothetical protein | NA | 1 | Chr09:49094668–49096996 (-) | 7.341e-11 | |
| Glyma.09G275500 | hypothetical protein | NA | 1 | Chr09:49105837–49106989 (+) | 1.756e-11 | |
| Glyma.09G275900 | hypothetical protein | AT5G01850:AT5G01850:Protein kinase superfamily protein | 1 | Chr09:49128687–49133154 (-) | 7.341e-11 | |
| Glyma.09G276000 | hypothetical protein | NA | 1 | Chr09:49131662–49132187 (+) | 7.341e-11 | |
| Glyma.09G276300 | WNK10 | AT3G51630:WNK5:with no lysine (K) kinase 5 | 1 | Chr09:49161113–49166087 (+) | 6.168e-11 | |
| Glyma.09G280300 | hypothetical protein | AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) | 1 | Chr09:49547489–49550731 (-) | 4.346e-11 | |
| Glyma.13G185400 | hypothetical protein | NA | 1 | Chr13:29936606–29937420 (+) | 3.718e-11 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 1.417e-19 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 2.211e-12 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 3.247e-12 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 2.211e-12 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 2.211e-12 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 9.407e-11 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 3.178e-12 | |
| Glyma.16G057600 | hypothetical protein | AT3G27170:CLC-B:chloride channel B | 1 | Chr16:5650591–5655830 (+) | 4.974e-12 | |
| Glyma.16G137600 | hypothetical protein | NA | 1 | Chr16:29468438–29472890 (-) | 5.544e-11 | |
| Glyma.16G138900 | hypothetical protein | NA | 1 | Chr16:29620531–29621995 (+) | 8.001e-11 | |
| Glyma.16G139000 | hypothetical protein | NA | 1 | Chr16:29623540–29631451 (+) | 1.932e-11 | |
| Glyma.16G139100 | hypothetical protein | NA | 1 | Chr16:29632332–29634248 (-) | 3.693e-15 | |
| Glyma.16G139500 | hypothetical protein | AT5G66550:AT5G66550:Maf-like protein | 1 | Chr16:29686243–29690410 (-) | 8.147e-14 | |
| Glyma.16G161500 | hypothetical protein | NA | 1 | Chr16:32076715–32092322 (-) | 4.92e-11 | |
| Glyma.16G179800 | hypothetical protein | AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein | 1 | Chr16:34022480–34027055 (-) | 2.3e-11 | |
| Glyma.16G189100 | hypothetical protein | AT1G05190:emb2394:Ribosomal protein L6 family | 1 | Chr16:35170253–35173950 (-) | 7.628e-11 | |
| Glyma.16G209300 | hypothetical protein | NA | 1 | Chr16:36856833–36863994 (-) | 4.361e-11 | |
| Glyma.16G209900 | hypothetical protein | NA | 1 | Chr16:36919141–36924601 (+) | 8.614e-11 | |
| Glyma.16G210300 | hypothetical protein | AT1G73340:AT1G73340:Cytochrome P450 superfamily protein | 1 | Chr16:36943073–36948828 (+) | 4.667e-12 | |
| Glyma.16G210400 | hypothetical protein | AT1G73350:AT1G73350:ankyrin repeat protein | 1 | Chr16:36949685–36953467 (+) | 4.667e-12 | |
| Glyma.17G215500 | KNAT5 | NA | 1 | Chr17:36212363–36217688 (-) | 6.003e-12 | |
| Glyma.17G218700 | hypothetical protein | NA | 1 | Chr17:36986191–36991558 (-) | 1.191e-12 | |
| Glyma.18G098900 | hypothetical protein | NA | 1 | Chr18:10297476–10305043 (+) | 7.404e-14 | |
| Glyma.18G099000 | hypothetical protein | AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein | 1 | Chr18:10326925–10347143 (-) | 7.404e-14 | |
| Glyma.18G099600 | hypothetical protein | AT4G27040:VPS22:EAP30/Vps36 family protein | 1 | Chr18:10453308–10458891 (-) | 1.649e-14 | |
| Glyma.18G099700 | hypothetical protein | AT5G54860:AT5G54860:Major facilitator superfamily protein | 1 | Chr18:10459970–10464888 (-) | 1.144e-14 | |
| Glyma.18G099900 | hypothetical protein | AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… | 1 | Chr18:10471443–10475076 (+) | 1.649e-14 | |
| Glyma.18G100300 | hypothetical protein | NA | 1 | Chr18:10523838–10534676 (+) | 1.276e-14 | |
| Glyma.18G105800 | hypothetical protein | AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein | 1 | Chr18:11773374–11782733 (+) | 1.962e-11 | |
| Glyma.18G106700 | hypothetical protein | NA | 1 | Chr18:11956201–11957138 (-) | 2.04e-13 | |
| Glyma.18G106800 | hypothetical protein | AT2G42880:MPK20:MAP kinase 20 | 1 | Chr18:11959920–11966545 (-) | 2.04e-13 | |
| Glyma.18G263300 | hypothetical protein | AT5G39420:cdc2cAt:CDC2C | 1 | Chr18:54865827–54872924 (-) | 5.172e-11 | |
| Glyma.18G263900 | hypothetical protein | AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein | 1 | Chr18:54907058–54912936 (-) | 2.075e-13 | |
| Glyma.18G266100 | hypothetical protein | NA | 1 | Chr18:55052591–55056489 (-) | 6.274e-15 | |
| Glyma.18G266500 | hypothetical protein | NA | 1 | Chr18:55088284–55091427 (-) | 6.108e-11 | |
| Glyma.18G267500 | hypothetical protein | NA | 1 | Chr18:55179516–55181798 (-) | 8.803e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 1.509e-11 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 1.509e-11 | |
| Glyma.20G113400 | hypothetical protein | AT1G68650:AT1G68650:Uncharacterized protein family (UPF0016)__AT1G25520:AT1G25520:Uncharacterized protein family (UPF00… | 1 | Chr20:35536332–35540802 (-) | 2.025e-11 |