Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12970

Metabolite ID
P12970
Deionized mass
105.0300 Da
Average m/z
106.0375
Average RT
11.3176
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
93
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

93 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.2e-12
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)2.075e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.898e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.898e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)2.376e-14
Glyma.20G098600 hypothetical protein AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 2Chr20:34184591–34191923 (+)8.133e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)5.53e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.453e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.453e-14
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)6.925e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)4.681e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)4.681e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)9.586e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.752e-16
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.253e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)2.801e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.082e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.531e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.531e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.531e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)5.332e-15
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)5.332e-15
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.718e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.755e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.557e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.557e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)2.536e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)2.536e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)9.72e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.29e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.189e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.2e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.2e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.2e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.2e-12
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)1.721e-11
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)1.721e-11
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)1.721e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.599e-11
Glyma.09G011600 hypothetical protein NA 1Chr09:891635–893300 (+)8.875e-11
Glyma.09G011700 hypothetical protein NA 1Chr09:894858–897607 (-)1.951e-12
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)1.657e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.509e-20
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.203e-17
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)8.515e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.076e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.076e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.722e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.163e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.674e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.316e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.316e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.316e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.819e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.843e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.843e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)3.015e-18
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)1.143e-15
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)1.143e-15
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)1.31e-14
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)1.458e-12
Glyma.13G052800 hypothetical protein NA 1Chr13:15005141–15009623 (+)4.849e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.446e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.447e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.898e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)6.311e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)7.105e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)4.672e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)7.214e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)8.721e-13
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)8.721e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.923e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.185e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.259e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)9.102e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)9.102e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)4.329e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)4.53e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.61e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.95e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.828e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.828e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.86e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)1.86e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.026e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.026e-14
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.894e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.101e-12
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)1.992e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.857e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.05e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.173e-14
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)3.105e-11