Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12934

Metabolite ID
P12934
Deionized mass
516.1871 Da
Average m/z
517.1913
Average RT
11.3060
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
24
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

24 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)1.328e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)1.328e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)1.193e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.479e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.57e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)1.921e-13
Glyma.08G350900 hypothetical protein AT3G25030:AT3G25030:RING/U-box superfamily protein__AT3G07120:AT3G07120:RING/U-box superfamily protein 1Chr08:46461098–46464368 (+)6.479e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)3.79e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)1.484e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)1.484e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)1.484e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)2.176e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.757e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.151e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.151e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.151e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.151e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.234e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.234e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.234e-11
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)2.032e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.412e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.709e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)3.371e-11