Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12815

Metabolite ID
P12815
Deionized mass
393.1657 Da
Average m/z
394.1744
Average RT
11.2549
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G071200 hypothetical protein NA 4Chr20:25316540–25366827 (+)3.316e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)3.693e-17
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)1.843e-15
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)1.263e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)5.211e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.269e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.822e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.247e-11
Glyma.14G170900 hypothetical protein AT1G78060:AT1G78060:Glycosyl hydrolase family protein 2Chr14:42298358–42306613 (-)3.206e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.234e-12
Glyma.20G070800 VAD1 AT1G02120:VAD1:GRAM domain family protein 2Chr20:25156336–25176331 (-)3.316e-11
Glyma.20G084900 hypothetical protein NA 2Chr20:31707347–31709780 (-)3.316e-11
Glyma.20G106900 hypothetical protein NA 2Chr20:34962043–34967985 (+)4.474e-14
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.226e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.226e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.013e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.896e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.559e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.019e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.019e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.478e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.167e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.167e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.167e-13
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)1.427e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.733e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)3.449e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.539e-12
Glyma.06G293300 hypothetical protein AT4G28280:LLG3:LORELEI-LIKE-GPI ANCHORED PROTEIN 3 1Chr06:48198132–48201464 (-)2.931e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.845e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.335e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)6.428e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.269e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.302e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.822e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.822e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.822e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.822e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.407e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.133e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)9.488e-13
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)2.179e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)2.179e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.247e-11
Glyma.14G171400 hypothetical protein NA 1Chr14:42398866–42404627 (+)1.284e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.069e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.721e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.154e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.016e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)7.673e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)7.046e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)9.602e-13
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)5.944e-12
Glyma.18G262800 hypothetical protein NA 1Chr18:54832649–54833890 (+)3.04e-11
Glyma.20G070100 hypothetical protein NA 1Chr20:24897324–24898925 (-)3.316e-11
Glyma.20G071000 hypothetical protein NA 1Chr20:25298698–25300941 (+)3.316e-11
Glyma.20G074500 hypothetical protein AT2G38710:AT2G38710:AMMECR1 family 1Chr20:26796617–26809116 (-)3.316e-11
Glyma.20G074600 hypothetical protein NA 1Chr20:26803189–26805842 (+)3.316e-11
Glyma.20G076500 hypothetical protein AT1G04780:AT1G04780:Ankyrin repeat family protein 1Chr20:27700886–27708055 (+)3.316e-11
Glyma.20G083800 hypothetical protein NA 1Chr20:31482676–31483763 (-)3.316e-11
Glyma.20G083900 hypothetical protein NA 1Chr20:31503404–31505246 (-)3.316e-11
Glyma.20G084000 hypothetical protein AT4G30220:RUXF:small nuclear ribonucleoprotein F__AT2G14285:AT2G14285:Small nuclear ribonucleoprotein family protein 1Chr20:31536334–31538924 (+)3.316e-11
Glyma.20G084500 hypothetical protein AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A 1Chr20:31666190–31674959 (-)3.316e-11
Glyma.20G084700 hypothetical protein NA 1Chr20:31686813–31687483 (-)3.316e-11
Glyma.20G085000 hypothetical protein NA 1Chr20:31745486–31748473 (-)3.316e-11
Glyma.20G085300 hypothetical protein AT2G33360:AT2G33360:cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) 1Chr20:31823173–31827117 (+)3.316e-11
Glyma.20G085400 hypothetical protein NA 1Chr20:31828204–31832688 (+)3.316e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.042e-12
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)2.058e-13
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)7.359e-14
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)5.887e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)8.16e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.055e-12