Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12607

Metabolite ID
P12607
Deionized mass
122.0371 Da
Average m/z
123.0450
Average RT
11.1772
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)9.17e-12
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 2Chr02:5577271–5582873 (-)1.207e-13
Glyma.02G277200 hypothetical protein AT5G12290:DGS1:dgd1 suppressor 1 2Chr02:45999642–46007578 (+)1.27e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.162e-11
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)1.399e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)1.149e-13
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)1.889e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.511e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.667e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)8.921e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)4.897e-19
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)4.897e-19
Glyma.02G060700 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr02:5508103–5512617 (+)6.543e-11
Glyma.02G277400 hypothetical protein AT2G26770:SCAB1:plectin-like protein 1Chr02:46014763–46020988 (-)1.27e-11
Glyma.02G277500 hypothetical protein AT1G54140:TAFII21:TATA binding protein associated factor 21kDa subunit 1Chr02:46027755–46029924 (+)1.27e-11
Glyma.02G278000 hypothetical protein NA 1Chr02:46067116–46071548 (+)3.941e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)4.369e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.843e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.743e-14
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)9.667e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)9.835e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)2.147e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.311e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.311e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.311e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.311e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.856e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.286e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.597e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.598e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)7.174e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.968e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.223e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.223e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.678e-21
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)1.669e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)1.669e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)1.041e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.162e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.162e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.162e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.162e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.824e-16
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.66e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)7.429e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)4.325e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)6.555e-14
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)6.555e-14
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.021e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.654e-13
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)4.058e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.237e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.418e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.124e-12
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)7.37e-11
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)7.37e-11
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)7.37e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)9.423e-13
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)6.91e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)2.401e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.163e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.163e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.924e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.924e-13
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)1.889e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.197e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.121e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.389e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.921e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.152e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.368e-16
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.28e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)2.823e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.811e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)7.489e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.298e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)5.298e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)7.286e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.277e-14
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.326e-11