P12425
Metabolite ID
P12425
Deionized mass
198.1339 Da
Average m/z
199.1402
Average RT
11.0996
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
88
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
88 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 4.98e-12 | |
| Glyma.16G114900 | hypothetical protein | NA | 3 | Chr16:25456379–25485759 (+) | 6.518e-11 | |
| Glyma.17G218600 | hypothetical protein | NA | 3 | Chr17:36975400–36982812 (-) | 3.89e-11 | |
| Glyma.18G196200 | hypothetical protein | AT3G09100:AT3G09100:mRNA capping enzyme family protein | 3 | Chr18:47102746–47129707 (+) | 2.368e-12 | |
| Glyma.08G123500 | hypothetical protein | NA | 2 | Chr08:9494946–9505931 (-) | 3.74e-11 | |
| Glyma.14G149300 | hypothetical protein | NA | 2 | Chr14:32235308–32258014 (+) | 1.003e-13 | |
| Glyma.14G201600 | hypothetical protein | NA | 2 | Chr14:46703283–46706500 (+) | 3.09e-14 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 2 | Chr16:26324650–26336836 (+) | 4.377e-13 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 4.98e-12 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 5.523e-12 | |
| Glyma.02G204700 | hypothetical protein | AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein | 1 | Chr02:38993365–39000790 (+) | 3.832e-12 | |
| Glyma.02G205300 | hypothetical protein | NA | 1 | Chr02:39037472–39038396 (-) | 9.679e-12 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 1 | Chr03:169480–172727 (+) | 2.544e-11 | |
| Glyma.03G018600 | hypothetical protein | AT2G45695:AT2G45695:Ubiquitin related modifier 1 | 1 | Chr03:1859210–1862572 (-) | 2.545e-13 | |
| Glyma.03G018800 | hypothetical protein | AT2G45680:TCP9:TCP family transcription factor | 1 | Chr03:1875182–1876855 (+) | 1.518e-12 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 7.349e-12 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 3.346e-13 | |
| Glyma.04G190200 | hypothetical protein | AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 | 1 | Chr04:46086785–46089618 (-) | 1.751e-11 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 6.534e-12 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 6.805e-12 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 6.805e-12 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 3.636e-13 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 1.012e-12 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 1.012e-12 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 1.012e-12 | |
| Glyma.05G182100 | hypothetical protein | NA | 1 | Chr05:37003489–37004855 (-) | 9.604e-11 | |
| Glyma.05G224700 | hypothetical protein | NA | 1 | Chr05:40351005–40361888 (+) | 1.025e-12 | |
| Glyma.05G226000 | hypothetical protein | AT5G19730:AT5G19730:Pectin lyase-like superfamily protein | 1 | Chr05:40458098–40461736 (+) | 1.602e-12 | |
| Glyma.05G226400 | hypothetical protein | AT4G29140:ADS1:MATE efflux family protein | 1 | Chr05:40480968–40482410 (-) | 1.593e-12 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 2.252e-13 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 7.638e-11 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 1.893e-11 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 1.893e-11 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 1.893e-11 | |
| Glyma.06G291600 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr06:48024204–48029614 (+) | 1.464e-12 | |
| Glyma.06G291800 | hypothetical protein | NA | 1 | Chr06:48044194–48047197 (-) | 2.511e-12 | |
| Glyma.06G292000 | hypothetical protein | NA | 1 | Chr06:48081084–48084476 (-) | 1.464e-12 | |
| Glyma.06G292100 | hypothetical protein | NA | 1 | Chr06:48095366–48097378 (+) | 1.464e-12 | |
| Glyma.06G292200 | hypothetical protein | AT5G44290:AT5G44290:Protein kinase superfamily protein | 1 | Chr06:48100578–48107433 (-) | 2.511e-12 | |
| Glyma.08G122200 | hypothetical protein | NA | 1 | Chr08:9416766–9429995 (-) | 3.74e-11 | |
| Glyma.08G122300 | hypothetical protein | AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 | 1 | Chr08:9435391–9437279 (+) | 3.74e-11 | |
| Glyma.08G122500 | hypothetical protein | NA | 1 | Chr08:9441329–9445315 (-) | 3.74e-11 | |
| Glyma.08G122700 | hypothetical protein | AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) | 1 | Chr08:9452604–9458932 (+) | 3.74e-11 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 7.567e-11 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 7.567e-11 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 7.567e-11 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 7.567e-11 | |
| Glyma.10G081200 | hypothetical protein | NA | 1 | Chr10:9600771–9603988 (-) | 5.568e-11 | |
| Glyma.10G081700 | hypothetical protein | NA | 1 | Chr10:9752508–9758422 (+) | 2.485e-12 | |
| Glyma.12G001400 | hypothetical protein | AT1G72090:AT1G72090:Methylthiotransferase | 1 | Chr12:113763–118480 (+) | 2.502e-11 | |
| Glyma.12G001600 | PM27 | seed maturation protein PM27 | AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… | 1 | Chr12:127545–128932 (+) | 2.502e-11 |
| Glyma.12G001700 | hypothetical protein | AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein | 1 | Chr12:132389–134935 (+) | 2.502e-11 | |
| Glyma.12G002400 | hypothetical protein | AT5G47850:CCR4:CRINKLY4 related 4 | 1 | Chr12:197288–200229 (+) | 9.709e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 8.084e-12 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 8.083e-12 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 7.485e-11 | |
| Glyma.13G201600 | hypothetical protein | NA | 1 | Chr13:31521512–31522992 (+) | 1.043e-11 | |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 1 | Chr13:31720004–31725252 (+) | 4.385e-11 | |
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 1 | Chr13:31727841–31735910 (-) | 4.385e-11 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 4.385e-11 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 7.807e-12 | |
| Glyma.14G134600 | hypothetical protein | AT4G31450:AT4G31450:RING/U-box superfamily protein | 1 | Chr14:23491895–23497735 (-) | 9.121e-11 | |
| Glyma.14G148800 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr14:32154755–32157298 (+) | 1.003e-13 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 3.09e-14 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 4.31e-11 | |
| Glyma.16G003000 | hypothetical protein | AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein | 1 | Chr16:164584–168767 (+) | 6.456e-11 | |
| Glyma.16G003200 | hypothetical protein | NA | 1 | Chr16:172940–178668 (-) | 6.456e-11 | |
| Glyma.16G003600 | hypothetical protein | AT5G49945:AT5G49945: | 1 | Chr16:198072–202486 (-) | 3.575e-11 | |
| Glyma.16G028100 | hypothetical protein | AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein | 1 | Chr16:2725294–2733429 (-) | 2.654e-12 | |
| Glyma.16G115300 | hypothetical protein | NA | 1 | Chr16:25584135–25585667 (+) | 6.518e-11 | |
| Glyma.16G115400 | hypothetical protein | NA | 1 | Chr16:25604547–25606360 (+) | 6.518e-11 | |
| Glyma.16G115500 | hypothetical protein | NA | 1 | Chr16:25622503–25630816 (+) | 6.518e-11 | |
| Glyma.16G115600 | hypothetical protein | AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr16:25661245–25664376 (-) | 6.518e-11 | |
| Glyma.16G116200 | hypothetical protein | AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein | 1 | Chr16:25892277–25904773 (+) | 1.123e-11 | |
| Glyma.16G116500 | hypothetical protein | AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein | 1 | Chr16:26057276–26069534 (+) | 8.86e-12 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 8.661e-13 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 8.78e-11 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 1.408e-13 | |
| Glyma.16G208500 | EIF6 | AT3G55620:eIF6A:Translation initiation factor IF6 | 1 | Chr16:36806718–36809299 (+) | 6.709e-11 | |
| Glyma.16G209300 | hypothetical protein | NA | 1 | Chr16:36856833–36863994 (-) | 4.042e-11 | |
| Glyma.17G218700 | hypothetical protein | NA | 1 | Chr17:36986191–36991558 (-) | 3.89e-11 | |
| Glyma.18G111800 | hypothetical protein | AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein | 1 | Chr18:13278653–13284970 (+) | 2.436e-11 | |
| Glyma.18G112600 | hypothetical protein | NA | 1 | Chr18:13398219–13405422 (+) | 2.683e-13 | |
| Glyma.18G197500 | hypothetical protein | NA | 1 | Chr18:47377826–47380850 (+) | 9.164e-11 | |
| Glyma.19G150000 | hypothetical protein | AT3G58060:AT3G58060:Cation efflux family protein | 1 | Chr19:41018746–41025024 (+) | 1.444e-12 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 2.013e-12 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 1 | Chr20:34984922–34988496 (+) | 2.19e-11 | |
| Glyma.20G124000 | hypothetical protein | AT1G15130:AT1G15130:Endosomal targeting BRO1-like domain-containing protein | 1 | Chr20:36650311–36658785 (+) | 7.263e-11 |