P12372
Metabolite ID
P12372
Deionized mass
489.1816 Da
Average m/z
490.1884
Average RT
11.0815
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G114900 | hypothetical protein | NA | 3 | Chr16:25456379–25485759 (+) | 1.16e-11 | |
| Glyma.08G338900 | hypothetical protein | NA | 2 | Chr08:45536950–45543029 (-) | 2.298e-13 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 1.567e-13 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 1.567e-13 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 2 | Chr16:26324650–26336836 (+) | 9.691e-13 | |
| Glyma.02G091800 | hypothetical protein | NA | 1 | Chr02:8129908–8133455 (+) | 7.477e-12 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 1 | Chr03:169480–172727 (+) | 1.228e-11 | |
| Glyma.03G002100 | hypothetical protein | AT5G01930:MAN6:Glycosyl hydrolase superfamily protein | 1 | Chr03:211934–216522 (+) | 3.914e-11 | |
| Glyma.03G002400 | hypothetical protein | AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 | 1 | Chr03:234217–238375 (-) | 3.914e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 9.293e-11 | |
| Glyma.04G190200 | hypothetical protein | AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 | 1 | Chr04:46086785–46089618 (-) | 6.337e-11 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 1.541e-11 | |
| Glyma.05G125800 | hypothetical protein | AT2G34790:MEE23:FAD-binding Berberine family protein | 1 | Chr05:31926976–31929133 (+) | 5.48e-13 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 4.003e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 2.63e-13 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 3.854e-11 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 1.805e-11 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 1.805e-11 | |
| Glyma.06G315100 | hypothetical protein | AT5G04930:ALA1:aminophospholipid ATPase 1 | 1 | Chr06:50401945–50408153 (+) | 1.156e-11 | |
| Glyma.08G150100 | hypothetical protein | AT2G44450:BGLU15:beta glucosidase 15 | 1 | Chr08:11525692–11536927 (+) | 4.968e-11 | |
| Glyma.08G338200 | hypothetical protein | NA | 1 | Chr08:45509289–45511145 (+) | 2.303e-13 | |
| Glyma.08G338600 | hypothetical protein | NA | 1 | Chr08:45522321–45523727 (-) | 2.303e-13 | |
| Glyma.10G028500 | hypothetical protein | NA | 1 | Chr10:2476846–2478953 (+) | 3.71e-11 | |
| Glyma.10G028700 | hypothetical protein | AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain | 1 | Chr10:2485817–2497071 (-) | 3.71e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 4.269e-11 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 4.269e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 7.086e-11 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 1 | Chr12:36473422–36498915 (+) | 7.086e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 5.383e-13 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 5.383e-13 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 1.567e-13 | |
| Glyma.13G156000 | hypothetical protein | AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 | 1 | Chr13:27104338–27109785 (+) | 2.591e-11 | |
| Glyma.13G170600 | ALDH2B6 | aldehyde dehydrogenase family 2 member B6 | AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 | 1 | Chr13:28436396–28440865 (-) | 9.271e-15 |
| Glyma.13G193900 | hypothetical protein | NA | 1 | Chr13:30714547–30714981 (-) | 9.624e-11 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 3.672e-11 | |
| Glyma.16G075800 | hypothetical protein | AT4G19420:AT4G19420:Pectinacetylesterase family protein | 1 | Chr16:7646131–7651379 (+) | 7.424e-11 | |
| Glyma.16G115300 | hypothetical protein | NA | 1 | Chr16:25584135–25585667 (+) | 1.16e-11 | |
| Glyma.16G115400 | hypothetical protein | NA | 1 | Chr16:25604547–25606360 (+) | 1.16e-11 | |
| Glyma.16G115500 | hypothetical protein | NA | 1 | Chr16:25622503–25630816 (+) | 1.16e-11 | |
| Glyma.16G115600 | hypothetical protein | AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr16:25661245–25664376 (-) | 1.16e-11 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 9.951e-13 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 1.491e-11 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 3.149e-13 | |
| Glyma.16G121000 | IQD20 | AT3G51380:IQD20:IQ-domain 20 | 1 | Chr16:26909514–26910355 (+) | 8.362e-11 | |
| Glyma.16G219700 | hypothetical protein | NA | 1 | Chr16:37690133–37695529 (-) | 4.843e-11 | |
| Glyma.18G299100 | hypothetical protein | AT5G13420:TRA2:Aldolase-type TIM barrel family protein | 1 | Chr18:57674222–57678396 (+) | 3.836e-14 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 1.83e-11 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 1.83e-11 | |
| Glyma.20G019500 | hypothetical protein | AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme | 1 | Chr20:2039210–2040459 (+) | 7.297e-14 | |
| Glyma.20G019700 | hypothetical protein | NA | 1 | Chr20:2047020–2050862 (-) | 7.373e-13 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 2.737e-15 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 1 | Chr20:34984922–34988496 (+) | 5.174e-12 |