Overview Annotation GWAS Evidence Associated genes

P12353

Metabolite ID
P12353
Deionized mass
296.1377 Da
Average m/z
297.1442
Average RT
11.0730
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
139
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

139 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)5.804e-15
Glyma.16G210200 hypothetical protein NA 5Chr16:36933402–36938940 (+)9.283e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.006e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.666e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.705e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)8.174e-15
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)7.979e-13
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.184e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)3.446e-14
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)3.796e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.325e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.398e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.398e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.814e-14
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)8.617e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)3.643e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.13e-14
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)3.518e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.86e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.359e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.749e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)4.434e-13
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)4.434e-13
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)4.434e-13
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)3.92e-11
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)6.829e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.848e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.448e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.049e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.714e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.701e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.386e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.13e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.863e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.436e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.634e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.824e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.059e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.687e-12
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)4.2e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.583e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.583e-16
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.682e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.444e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)6.009e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.785e-12
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)6.377e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)6.377e-11
Glyma.06G293700 hypothetical protein AT2G20740:AT2G20740:Tetraspanin family protein 1Chr06:48253149–48265560 (+)7.894e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.007e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.007e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.136e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.136e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)9.407e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.726e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.394e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.75e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)5.2e-12
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)8.686e-14
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)6.366e-13
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)6.366e-13
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)1.721e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.491e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.411e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.851e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)7.58e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.129e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.368e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)4.495e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.981e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)3.386e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)3.386e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)4.567e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.32e-13
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)3.773e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)8.838e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.878e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.878e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.901e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.901e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.325e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)6.986e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.369e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.993e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.705e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.719e-13
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)3.103e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.996e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.996e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.398e-14
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.455e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)2.786e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.816e-11
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)5.926e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.754e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)9.484e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.348e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.348e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.594e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.874e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.708e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.235e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.827e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.827e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.253e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)6.868e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.513e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.249e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.435e-12
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)7.644e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.96e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.357e-14
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.944e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.944e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.114e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.161e-13
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.815e-12
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)3.385e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)2.232e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.427e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.283e-16
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.173e-15
Glyma.17G219300 hypothetical protein AT1G48270:GCR1:G-protein-coupled receptor 1 1Chr17:37088115–37094715 (+)6.111e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)2.701e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)5.162e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.189e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.408e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)9.15e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.57e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.569e-15
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.845e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.809e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.064e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)6.909e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.076e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.779e-12
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)1.726e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.07e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.641e-12