Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12338

Metabolite ID
P12338
Deionized mass
414.2070 Da
Average m/z
415.2156
Average RT
11.0694
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)7.147e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.184e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.59e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.198e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.034e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.009e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)7.148e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.723e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.892e-13
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.701e-11
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)3.082e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)3.082e-11
Glyma.04G191400 hypothetical protein AT3G48380:AT3G48380:Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 1Chr04:46220242–46235879 (+)6.325e-15
Glyma.04G192000 hypothetical protein AT3G48430:REF6:relative of early flowering 6 1Chr04:46279239–46297477 (-)8.196e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.013e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.09e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)2.316e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)2.316e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)6.738e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.529e-11
Glyma.08G117700 hypothetical protein NA 1Chr08:9080318–9084658 (-)6.274e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.702e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)2.216e-12
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)2.973e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)2.973e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)5.137e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.217e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.198e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.637e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.841e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.637e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.637e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.39e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.034e-15
Glyma.16G180800 hypothetical protein AT1G02260:AT1G02260:Divalent ion symporter 1Chr16:34164228–34171821 (+)5.651e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.436e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.436e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)1.357e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.034e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.21e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.286e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.286e-11