Overview Annotation GWAS Evidence Associated genes

P12288

Metabolite ID
P12288
Deionized mass
356.0728 Da
Average m/z
357.0800
Average RT
11.0510
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
8
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

8 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.10G019200 hypothetical protein AT4G02460:PMS1:DNA mismatch repair protein 2Chr10:1656738–1663920 (-)8.94e-11
Glyma.10G019300 hypothetical protein AT4G02480:AT4G02480:AAA-type ATPase family protein 2Chr10:1665415–1677518 (-)8.94e-11
Glyma.10G019100 LSM4 AT5G27720:emb1644:Small nuclear ribonucleoprotein family protein 1Chr10:1652905–1655407 (-)8.94e-11
Glyma.13G184300 hypothetical protein AT1G11160:AT1G11160:Transducin/WD40 repeat-like superfamily protein 1Chr13:29805943–29815201 (+)2.124e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)2.124e-11
Glyma.13G184600 hypothetical protein AT1G67960:POD1:POLLEN DEFECTIVE IN GUIDANCE-like protein 1Chr13:29837154–29848121 (+)2.124e-11
Glyma.16G053200 hypothetical protein AT3G26960:AT3G26960:Pollen Ole e 1 allergen and extensin family protein 1Chr16:5168246–5169977 (+)6.542e-12
Glyma.16G053300 hypothetical protein AT5G41040:RWP1:HXXXD-type acyl-transferase family protein 1Chr16:5180282–5183019 (-)6.542e-12