Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12126

Metabolite ID
P12126
Deionized mass
701.1875 Da
Average m/z
702.1995
Average RT
11.0007
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G072000 hypothetical protein AT1G52800:AT1G52800:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 4Chr16:7255773–7261809 (+)1.45e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)3.624e-12
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)8.581e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.85e-11
Glyma.07G095000 hypothetical protein NA 3Chr07:8843665–8855430 (+)5.761e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)3.878e-13
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)2.028e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)3.476e-15
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 2Chr10:48805999–48811533 (-)4.08e-11
Glyma.16G062500 hypothetical protein NA 2Chr16:6099546–6105267 (-)4.705e-12
Glyma.16G066200 hypothetical protein AT5G40650:SDH2-2:succinate dehydrogenase 2-2__AT3G27380:SDH2-1:succinate dehydrogenase 2-1 2Chr16:6576967–6580036 (-)1.42e-15
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)4.636e-12
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)1.456e-13
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)3.515e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.286e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.745e-12
Glyma.03G248000 hypothetical protein AT3G04630:WDL1:WVD2-like 1__AT1G54460:AT1G54460:TPX2 (targeting protein for Xklp2) protein family 1Chr03:44455474–44460323 (-)6.827e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.391e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.697e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.845e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.845e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.898e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.29e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.29e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.29e-12
Glyma.05G228700 hypothetical protein AT4G28860:ckl4:casein kinase I-like 4 1Chr05:40658365–40665783 (-)4.222e-11
Glyma.05G229100 hypothetical protein AT2G20080:AT2G20080:uncharacterized protein 1Chr05:40676349–40678423 (-)4.222e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.148e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.734e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.056e-16
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.85e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.849e-11
Glyma.07G093800 hypothetical protein NA 1Chr07:8755633–8760962 (+)2.337e-11
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 1Chr09:6937814–6941687 (+)3.142e-12
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)3.31e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)4.686e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.552e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.552e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.552e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.552e-11
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)6.988e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.844e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.134e-11
Glyma.16G064200 hypothetical protein NA 1Chr16:6333543–6337085 (-)2.719e-12
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)7.499e-12
Glyma.16G066900 hypothetical protein NA 1Chr16:6636803–6639454 (+)6.054e-11
Glyma.16G072200 hypothetical protein NA 1Chr16:7272949–7275103 (+)3.288e-12
Glyma.16G072400 hypothetical protein AT5G40370:GRXC2:Glutaredoxin family protein 1Chr16:7292429–7294920 (+)5.593e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.465e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)9.241e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)5.227e-13