Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12120

Metabolite ID
P12120
Deionized mass
514.1064 Da
Average m/z
515.1158
Average RT
10.9978
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
26
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

26 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.876e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)6.809e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.385e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.385e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.935e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.42e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.229e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)9.184e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)1.873e-11
Glyma.08G109700 GmJ1 AT4G13830:J20:DNAJ-like 20 1Chr08:8419650–8422508 (+)8.19e-13
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)1.873e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)6.194e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)2.704e-14
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)5.611e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)3.015e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)1.413e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.886e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.886e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.886e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.478e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.876e-11
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)6.256e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.136e-14
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)1.968e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.99e-13
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)4.424e-11