Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12005

Metabolite ID
P12005
Deionized mass
144.0773 Da
Average m/z
145.0851
Average RT
10.9511
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)7.791e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 2Chr11:9667918–9671917 (-)1.123e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)6.831e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)7.791e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.631e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.023e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.992e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.992e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.992e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.31e-20
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.212e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.898e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.367e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.367e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.537e-11
Glyma.08G184000 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr08:14749219–14752814 (-)2.454e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.525e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.318e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.318e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.318e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.318e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.869e-11
Glyma.11G126800 hypothetical protein AT1G06050:AT1G06050:ENHANCED DISEASE RESISTANCE-like protein (DUF1336) 1Chr11:9647447–9649369 (+)3.54e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.123e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.123e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)4.243e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)9.855e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.52e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.52e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)3.137e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.137e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.343e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.343e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.568e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.796e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.568e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.568e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.891e-11
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)5.454e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)5.382e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)4.594e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.025e-13
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)6.728e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)6.728e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)6.728e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.03e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)9.662e-11
Glyma.18G237700 hypothetical protein AT4G01280:AT4G01280:Homeodomain-like superfamily protein 1Chr18:52631633–52637246 (-)8.081e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)4.436e-11