Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11952

Metabolite ID
P11952
Deionized mass
669.1612 Da
Average m/z
670.1687
Average RT
10.9337
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.283e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.132e-16
Glyma.14G094500 hypothetical protein NA 2Chr14:8788109–8793948 (-)3.462e-16
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.604e-18
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.292e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.942e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.902e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.078e-11
Glyma.05G103700 hypothetical protein NA 1Chr05:27632520–27637991 (+)8.979e-11
Glyma.05G207900 hypothetical protein AT4G11450:AT4G11450:bromo-adjacent domain protein, putative (DUF3527) 1Chr05:39000306–39005331 (+)1.898e-11
Glyma.05G208000 hypothetical protein NA 1Chr05:39007106–39011525 (-)1.897e-11
Glyma.05G208100 hypothetical protein AT1G63640:AT1G63640:P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-co… 1Chr05:39013785–39022216 (-)1.898e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)1.12e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.45e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.799e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.553e-11
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)6.152e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)1.267e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)7.096e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)7.096e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)2.636e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.017e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.561e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.018e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)2.812e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)2.812e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.112e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)2.479e-16
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)1.275e-13
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)1.275e-13
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)1.275e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.665e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.308e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.308e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.308e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.308e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.063e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.139e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.139e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.574e-11
Glyma.14G093400 hypothetical protein NA 1Chr14:8675773–8681315 (-)2.952e-12
Glyma.14G094700 hypothetical protein AT4G33010:GLDP1:glycine decarboxylase P-protein 1 1Chr14:8801566–8808263 (-)2.049e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.51e-12
Glyma.14G095000 hypothetical protein AT5G50960:NBP35:nucleotide binding protein 35 1Chr14:8837723–8846055 (-)8.572e-13
Glyma.14G095700 hypothetical protein AT2G26140:ftsh4:FTSH protease 4 1Chr14:8906064–8920433 (-)2.452e-12
Glyma.14G134600 hypothetical protein AT4G31450:AT4G31450:RING/U-box superfamily protein 1Chr14:23491895–23497735 (-)8.123e-11
Glyma.14G135100 hypothetical protein AT4G31540:EXO70G1:exocyst subunit exo70 family protein G1 1Chr14:23623422–23626499 (-)8.301e-11
Glyma.14G135400 hypothetical protein AT2G24570:WRKY17:WRKY DNA-binding protein 17 1Chr14:23729201–23732285 (-)5.185e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.604e-18
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)4.788e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.292e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.203e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.435e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)8.883e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)8.883e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.139e-15
Glyma.16G180400 hypothetical protein AT5G23950:AT5G23950:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr16:34093033–34094634 (+)6.039e-11
Glyma.16G197200 hypothetical protein NA 1Chr16:35854742–35861472 (-)7.947e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.431e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)4.101e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.727e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.727e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.552e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.552e-11