Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11890

Metabolite ID
P11890
Deionized mass
380.1597 Da
Average m/z
381.1636
Average RT
10.9137
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.905e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.368e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)2.828e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.044e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)7.665e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)2.946e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.905e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.82e-15
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.231e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.252e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.553e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.553e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.553e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)5.288e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.941e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.978e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.209e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.456e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.603e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.226e-14
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)9.011e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.524e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.524e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.675e-14
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.552e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.87e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.368e-11
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)7.308e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.827e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.533e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.372e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.852e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.465e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.346e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.346e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.305e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.305e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.821e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.389e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.389e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.074e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)5.7e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.7e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.787e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.787e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.787e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.787e-13
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.082e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.919e-13
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)4.578e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.214e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.951e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.214e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.214e-15
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)6.251e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.096e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.434e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)7.871e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.558e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)5.277e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.175e-13
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)9.612e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)9.612e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.457e-12
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)3.919e-12
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)3.919e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)2.946e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.645e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)2.946e-13
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)1.164e-12
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)9.652e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)9.653e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.464e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.207e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.702e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.702e-14