Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11762

Metabolite ID
P11762
Deionized mass
228.1093 Da
Average m/z
229.1177
Average RT
10.8820
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
143
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

143 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)5.628e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.496e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.199e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.699e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)7.523e-14
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.65e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.65e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.765e-12
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)9.093e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)3.039e-13
Glyma.16G178800 hypothetical protein NA 2Chr16:33950003–33953968 (-)4.728e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.261e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.695e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.097e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.335e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.261e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)5.321e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.126e-14
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)7.343e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.638e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)7.209e-13
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.886e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.21e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.789e-13
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)1.475e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.115e-15
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)4.706e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.716e-16
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.402e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)3.776e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.452e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.578e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.778e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.864e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.864e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.562e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.135e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.135e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.135e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.231e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.278e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.235e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.226e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.818e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.818e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.818e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.552e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.552e-15
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)6.454e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.124e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.128e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.064e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.128e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.128e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.064e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.572e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.853e-11
Glyma.06G320800 IF7GT6 isoflavone 7-O-glucosyltransferase UGT6 NA 1Chr06:50951025–50956134 (-)6.923e-11
Glyma.06G324300 GmCSyGT1 NA 1Chr06:51189321–51193954 (-)9.122e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.603e-15
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)8.359e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)2.451e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.69e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.65e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.65e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)8.14e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.65e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)7.335e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)7.335e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.956e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.287e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.211e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.22e-15
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.292e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.292e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.292e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.292e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.804e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.804e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.804e-12
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)6.039e-13
Glyma.12G035600 hypothetical protein AT5G45600:GAS41:YEATS family protein 1Chr12:2597690–2600977 (+)4.629e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.631e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.631e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.914e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.914e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.942e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.942e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.214e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.384e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)5.532e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.283e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.283e-12
Glyma.13G067900 hypothetical protein NA 1Chr13:16787469–16789119 (+)3.107e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.634e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.299e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.299e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.299e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.399e-12
Glyma.14G004600 hypothetical protein AT5G48230:ACAT2:acetoacetyl-CoA thiolase 2 1Chr14:390064–394491 (+)5.123e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.813e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.917e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)3.918e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.918e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)9.093e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.655e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.807e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.655e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.655e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.027e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.532e-14
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)4.553e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.373e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.496e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.496e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.496e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.496e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.678e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.699e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.699e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.874e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.949e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)8.296e-12
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)2.452e-11
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)2.447e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)2.447e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)2.447e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.576e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.475e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.475e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.849e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.849e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)6.896e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.695e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.376e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.376e-17
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)4.992e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.08e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.763e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.091e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.874e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)6.236e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)8.045e-12