Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11731

Metabolite ID
P11731
Deionized mass
498.1173 Da
Average m/z
499.1247
Average RT
10.8743
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 4Chr10:48805999–48811533 (-)3.74e-13
Glyma.07G095000 hypothetical protein NA 3Chr07:8843665–8855430 (+)7.212e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)5.737e-12
Glyma.07G093700 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 2Chr07:8723740–8734056 (-)5.13e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.341e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.098e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.098e-15
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.278e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.374e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.374e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.459e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)9.555e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.701e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.183e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.9e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.366e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.747e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.747e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.747e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.073e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.574e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.003e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.321e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.918e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.665e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.622e-13
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.622e-13
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)2.345e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)7.905e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)6.416e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.967e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.205e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.205e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.205e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.205e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.017e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.017e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.341e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.087e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.087e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.098e-15
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)7.185e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.087e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.649e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.923e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.146e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.146e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)9.136e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.452e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.24e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)3.291e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)4.527e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)3.362e-12