Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11699

Metabolite ID
P11699
Deionized mass
270.0700 Da
Average m/z
271.0793
Average RT
10.8659
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
139
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

139 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)2.471e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)3.802e-13
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)4.845e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.351e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.579e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.246e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)1.054e-11
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)5.402e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)5.629e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.197e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.047e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.047e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)8.727e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.586e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.222e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)6.85e-11
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)1.227e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.326e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.598e-12
Glyma.01G014800 hypothetical protein NA 1Chr01:1459585–1464612 (+)3.102e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.662e-15
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)3.806e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)2.278e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.968e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)7.481e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)2.587e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.852e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.346e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.441e-14
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)1.821e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.911e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.285e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)4.014e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.849e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.121e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.121e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.318e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.148e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.148e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.148e-14
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.658e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.267e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.645e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.15e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.557e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.557e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.557e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.909e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.551e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.551e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.551e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.736e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)9.709e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.548e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.103e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.548e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.548e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.103e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)6.066e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)6.066e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.799e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.351e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.351e-14
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.287e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.272e-16
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)5.018e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)5.018e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.89e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.197e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.197e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.197e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.197e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)1.476e-11
Glyma.08G150300 hypothetical protein NA 1Chr08:11550134–11555581 (+)3.102e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.641e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.905e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.726e-13
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)2.628e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.047e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.577e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.577e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.577e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.577e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.981e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.434e-12
Glyma.10G256200 hypothetical protein NA 1Chr10:48306531–48308768 (-)7.589e-11
Glyma.10G256300 hypothetical protein AT1G49960:AT1G49960:Xanthine/uracil permease family protein 1Chr10:48311208–48315662 (-)7.589e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)3.957e-11
Glyma.11G122700 hypothetical protein NA 1Chr11:9354319–9356396 (-)1.674e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)8.031e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.754e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.754e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.754e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)1.767e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.611e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.65e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.65e-15
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)4.761e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.05e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.05e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.245e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.749e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.579e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.047e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.047e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.49e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.091e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.826e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.335e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.299e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.299e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.768e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.084e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.768e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.768e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.169e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.728e-18
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.804e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.11e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.885e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.248e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)1.894e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)2.462e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)8.622e-11
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)5.061e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)8.43e-12
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)5.211e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.594e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.736e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.663e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.246e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)2.328e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.351e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.925e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.925e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)6.484e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.466e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.466e-14
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.011e-11