Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11641

Metabolite ID
P11641
Deionized mass
548.2099 Da
Average m/z
549.2181
Average RT
10.8522
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 4Chr03:2423540–2428634 (-)3.335e-18
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.984e-14
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.403e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.854e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)4.875e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.091e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.697e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.984e-14
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)7.764e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.425e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.59e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.636e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.043e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.604e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.604e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.852e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.423e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)9.897e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.84e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.935e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.14e-11
Glyma.09G209200 hypothetical protein AT1G32160:AT1G32160:beta-casein (DUF760) 1Chr09:43361634–43365478 (-)1.177e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.53e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.318e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.355e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.355e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)8.138e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.355e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.355e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)5.561e-12
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)5.561e-12
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)5.561e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.704e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.941e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.941e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.941e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.091e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.959e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.959e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.96e-12
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)1.946e-13
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)1.946e-13
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)2.075e-13
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)6.206e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)4.216e-13
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)4.007e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.96e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.157e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.96e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.96e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.013e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.001e-17
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.923e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.223e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.315e-14
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.263e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.19e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.728e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.728e-13