Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11505

Metabolite ID
P11505
Deionized mass
242.1593 Da
Average m/z
243.1654
Average RT
10.8004
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)5e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.3e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.611e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.611e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.493e-11
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)8.542e-14
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)8.453e-14
Glyma.16G180100 hypothetical protein NA 2Chr16:34070806–34076053 (+)1.05e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.017e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.118e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.703e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.665e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.023e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.125e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.125e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.018e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.219e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.219e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.219e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.467e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.24e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.24e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)5.424e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)5.424e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)8.361e-11
Glyma.08G223400 hypothetical protein AT1G51660:MKK4:mitogen-activated protein kinase kinase 4 1Chr08:18127350–18129276 (+)8.138e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)7.299e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.054e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.615e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.076e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.237e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.237e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.045e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.045e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.611e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.493e-11
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)7.672e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)6.495e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)6.495e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.863e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.628e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.863e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.862e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.502e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.259e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.139e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.313e-11
Glyma.16G137800 hypothetical protein NA 1Chr16:29480352–29487400 (-)2.104e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)3.462e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.44e-13
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)8.463e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.246e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)3.931e-12
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)2.265e-11
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)1.208e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.64e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)2.85e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.923e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.01e-13
Glyma.19G147000 hypothetical protein NA 1Chr19:40784257–40785271 (-)6.593e-11
Glyma.19G147100 hypothetical protein NA 1Chr19:40799107–40802473 (+)6.593e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.285e-11