Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10900

Metabolite ID
P10900
Deionized mass
501.1732 Da
Average m/z
502.1815
Average RT
10.6001
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 4Chr16:30652378–30659548 (+)2.494e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)9.976e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.8e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.8e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.607e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.003e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)5.642e-13
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)7.081e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.505e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.219e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.594e-11
Glyma.06G147600 BRI1A brassinosteroid receptor AT4G39400:BRI1:Leucine-rich receptor-like protein kinase family protein 1Chr06:12052122–12056526 (-)5.762e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.248e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.892e-15
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.522e-12
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)5.118e-11
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)2.736e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.264e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.454e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.134e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)2.372e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)8.562e-11
Glyma.11G163300 WRKY19 WRKY transcription factor 19 NA 1Chr11:15312631–15316628 (+)3.849e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.315e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.315e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.71e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.167e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.167e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.35e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.35e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.8e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.317e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.607e-11
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)5.465e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.03e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.282e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.169e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.282e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.282e-13
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)8.432e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)8.432e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)5.712e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.146e-15
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)8.151e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.494e-15
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.017e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.642e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.328e-13
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)3.127e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.435e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.128e-12