Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10890

Metabolite ID
P10890
Deionized mass
547.1890 Da
Average m/z
548.1970
Average RT
10.5951
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.89e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)6.126e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)4.356e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.066e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.507e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.52e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.142e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 2Chr16:36871978–36878151 (-)5.017e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.629e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.386e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.089e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.12e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.045e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.045e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.983e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)6.743e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.255e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.221e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.221e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.686e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.686e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.859e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.475e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.142e-11
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.326e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.772e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.403e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.772e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.772e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)4.84e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.545e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.989e-15
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.021e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)3.798e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)6.821e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.394e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)4.902e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.356e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.066e-14
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)9.574e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.93e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.133e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.818e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.85e-15