Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10862

Metabolite ID
P10862
Deionized mass
331.1121 Da
Average m/z
332.1215
Average RT
10.5870
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)8.372e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)8.596e-11
Glyma.18G196600 hypothetical protein NA 2Chr18:47245495–47254950 (+)8.404e-12
Glyma.18G197100 hypothetical protein NA 2Chr18:47324304–47331665 (+)8.404e-12
Glyma.01G021000 hypothetical protein NA 1Chr01:2122589–2125447 (+)9.725e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)2.712e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)4.668e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)4.668e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)4.668e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)5.19e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)9.809e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.366e-13
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.035e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.816e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.25e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.616e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.419e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.988e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.988e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.43e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)8.599e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)2.769e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.26e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.719e-11
Glyma.09G099500 hypothetical protein AT1G16310:AT1G16310:Cation efflux family protein 1Chr09:18099034–18105167 (+)2.218e-11
Glyma.09G099600 hypothetical protein NA 1Chr09:18100113–18100745 (+)2.218e-11
Glyma.09G099800 hypothetical protein NA 1Chr09:18134075–18134470 (-)2.218e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)9.769e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.099e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.675e-11
Glyma.14G179000 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr14:44030814–44034325 (+)2.576e-12
Glyma.14G179200 hypothetical protein AT4G24380:AT4G24380:dihydrofolate reductase 1Chr14:44060802–44063722 (+)2.576e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.892e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.361e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.892e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.892e-16
Glyma.16G024700 hypothetical protein NA 1Chr16:2403095–2406034 (+)2.682e-12
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)6.257e-11
Glyma.16G025000 hypothetical protein AT3G61730:RMF:reduced male fertility__AT5G36000:AT5G36000:F-box protein RMF 1Chr16:2422720–2426701 (+)2.682e-12
Glyma.16G140800 hypothetical protein AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein 1Chr16:29854784–29858843 (-)2.518e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)7.408e-13
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)3.988e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)5.286e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.529e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)5.286e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.501e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.911e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.911e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)8.596e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)4.872e-12
Glyma.18G196800 hypothetical protein NA 1Chr18:47251025–47251837 (+)8.404e-12
Glyma.18G197300 hypothetical protein AT3G09050:AT3G09050:8-amino-7-oxononanoate synthase 1Chr18:47329987–47330952 (-)8.404e-12
Glyma.18G197500 hypothetical protein NA 1Chr18:47377826–47380850 (+)4.84e-14
Glyma.18G197600 hypothetical protein AT5G01220:SQD2:sulfoquinovosyldiacylglycerol 2 1Chr18:47409831–47414924 (-)6.267e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.376e-13
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)8.923e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)2.606e-11