Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10820

Metabolite ID
P10820
Deionized mass
614.2420 Da
Average m/z
615.2529
Average RT
10.5788
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)3.923e-15
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.266e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.761e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.064e-15
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 2Chr10:48805999–48811533 (-)9.822e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.451e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.947e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.947e-14
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)8.258e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)2.685e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)3.141e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.968e-12
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)4.531e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.154e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.937e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.937e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.785e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.641e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.641e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.641e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.029e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.273e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.423e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.416e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.235e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.446e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.446e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)7.402e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.336e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.627e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.258e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.258e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.258e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.258e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.317e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.317e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.451e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.619e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.62e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.947e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.774e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.739e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.679e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)4.403e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)4.403e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.928e-18
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)8.084e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)8.084e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.393e-13
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.027e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.144e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.716e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.064e-15
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)4.958e-13
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)3.067e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)1.979e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.7e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.7e-13
Glyma.20G033600 hypothetical protein NA 1Chr20:4581093–4581402 (-)7.239e-11
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)1.837e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.141e-12
Glyma.20G107000 hypothetical protein NA 1Chr20:34968161–34968457 (+)6.461e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)6.369e-11
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)4.182e-12
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)1.643e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.005e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)5.103e-11
Glyma.20G109100 hypothetical protein AT1G14590:AT1G14590:Nucleotide-diphospho-sugar transferase family protein 1Chr20:35166747–35171332 (+)5.103e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.563e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.168e-13
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)8.237e-14