Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10785

Metabolite ID
P10785
Deionized mass
482.2205 Da
Average m/z
483.2285
Average RT
10.5664
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)2.346e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)7.656e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.961e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.576e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.824e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.082e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.696e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)6.144e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)4.005e-12
Glyma.05G122300 hypothetical protein AT3G60360:EDA14:embryo sac development arrest 14 1Chr05:31585853–31588967 (-)5.697e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.72e-14
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)6.653e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.908e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.764e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.764e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.247e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.124e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.124e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.124e-16
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)3.771e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.533e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.467e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.987e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.688e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.032e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.961e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.961e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.961e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.961e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.043e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.043e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.135e-11
Glyma.09G050800 AAH2 AT4G20070:AAH:allantoate amidohydrolase 1Chr09:4413615–4418223 (-)4.903e-12
Glyma.09G051100 hypothetical protein NA 1Chr09:4454515–4461881 (+)1.233e-11
Glyma.09G051500 hypothetical protein AT3G06960:PDE320:pigment defective 320 1Chr09:4488096–4493102 (-)1.233e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.693e-13
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.689e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.689e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.597e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.597e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.597e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.597e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.628e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.377e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)9.406e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.564e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.565e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.565e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.519e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.519e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.8e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.824e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.832e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.198e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.261e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.004e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.47e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.421e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.574e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.496e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.663e-11
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)5.335e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.054e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)3.714e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.728e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.728e-11
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)1.501e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.034e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)3.201e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.602e-12