Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10746

Metabolite ID
P10746
Deionized mass
577.1760 Da
Average m/z
578.1829
Average RT
10.5502
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 5Chr08:11525692–11536927 (+)1.284e-14
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.205e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)3.78e-11
Glyma.08G149500 hypothetical protein NA 2Chr08:11460264–11465243 (-)2.053e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.936e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.675e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.671e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.671e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.493e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.294e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)5.051e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.356e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.955e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.065e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.065e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.065e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.86e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.027e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.878e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.224e-11
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)1.219e-12
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)7.015e-14
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.133e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.444e-15
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.78e-11
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)1.663e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)1.663e-12
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)2.865e-12
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)2.866e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)4.938e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)5.219e-13
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)4.304e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.537e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.537e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.44e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.265e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.805e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.805e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.856e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.382e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.382e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.671e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.119e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.88e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.119e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.119e-15
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.779e-13
Glyma.16G180800 hypothetical protein AT1G02260:AT1G02260:Divalent ion symporter 1Chr16:34164228–34171821 (+)2.125e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)2.148e-12
Glyma.18G197500 hypothetical protein NA 1Chr18:47377826–47380850 (+)3.007e-12
Glyma.18G197600 hypothetical protein AT5G01220:SQD2:sulfoquinovosyldiacylglycerol 2 1Chr18:47409831–47414924 (-)6.699e-11
Glyma.19G137700 hypothetical protein NA 1Chr19:39904075–39916887 (+)9.25e-11