Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10731

Metabolite ID
P10731
Deionized mass
288.0816 Da
Average m/z
289.0891
Average RT
10.5445
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.116e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)4.096e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)2.101e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.101e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)6.13e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)6.13e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)6.13e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.51e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.489e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)1.706e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.935e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)9.664e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)9.664e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)9.664e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)9.578e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.155e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.852e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.852e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.44e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.684e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.684e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.684e-13
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)1.548e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.231e-12
Glyma.05G237500 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr05:41383632–41394607 (+)4.735e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.012e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.116e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.116e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.056e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)8.16e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.101e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.101e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.101e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.542e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.37e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)6.13e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)6.13e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)6.13e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)6.13e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)6.13e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.131e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.341e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.193e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.193e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 1Chr12:35879106–35881779 (+)6.585e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.51e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.069e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.069e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.069e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.154e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.763e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.264e-14
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)4.738e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)2.168e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.103e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.07e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.459e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.292e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.586e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)4.096e-12
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)5.147e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.181e-12