Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10729

Metabolite ID
P10729
Deionized mass
720.2338 Da
Average m/z
721.2433
Average RT
10.5435
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.593e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)9.42e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)4.813e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.098e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.776e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)3.104e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.223e-12
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)6.104e-12
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)4.384e-11
Glyma.03G017500 hypothetical protein NA 1Chr03:1761083–1762800 (+)7.81e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.738e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.324e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)7.438e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.619e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.366e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.871e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.192e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.243e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.472e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.42e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.098e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.098e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.098e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.098e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.496e-17
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.803e-15
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)3.752e-14
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)3.752e-14
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.155e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.412e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.608e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.922e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.861e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.861e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.861e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.326e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.177e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.927e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.138e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.927e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.927e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.692e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.051e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.478e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)6.011e-13
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)5.209e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.907e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.667e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.667e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.104e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.55e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.519e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.475e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.475e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)3.701e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)5.839e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.123e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.223e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.593e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.2e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)3.733e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.385e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.385e-12