Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10604

Metabolite ID
P10604
Deionized mass
442.0321 Da
Average m/z
443.0382
Average RT
10.5042
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
79
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

79 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)5.535e-12
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)2.647e-13
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)7.846e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)2.06e-11
Glyma.06G201700 hypothetical protein NA 2Chr06:18577883–18617874 (+)9.887e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.334e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.393e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.733e-15
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)7.267e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)7.5e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)7.598e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)5.535e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.172e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.172e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)5.677e-12
Glyma.03G244500 hypothetical protein AT3G05090:LRS1:Transducin/WD40 repeat-like superfamily protein 1Chr03:44195906–44205767 (+)1.957e-13
Glyma.03G245100 hypothetical protein AT1G54500:AT1G54500:Rubredoxin-like superfamily protein 1Chr03:44246906–44248269 (-)6.831e-12
Glyma.03G246000 hypothetical protein AT5G28300:AT5G28300:Duplicated homeodomain-like superfamily protein 1Chr03:44312958–44316698 (+)4.381e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)7.473e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.36e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.398e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.098e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.115e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.218e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.218e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.218e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.593e-12
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)5.113e-14
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)5.113e-14
Glyma.06G150700 hypothetical protein AT1G49180:AT1G49180:protein kinase family protein 1Chr06:12289992–12292323 (+)4.256e-11
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)2.551e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)8.065e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.779e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.779e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.334e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.334e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.334e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.334e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.66e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.73e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.211e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.203e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)2.463e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)3.069e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.229e-14
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.229e-14
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.161e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.177e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.714e-11
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)4.918e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.733e-15
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)1.589e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)6.25e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.906e-11
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)7.846e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)7.846e-11
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)8.818e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.887e-15
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.887e-15
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.004e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.962e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.765e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.168e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.797e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.794e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)8.926e-13
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)9.874e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)9.874e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.112e-11
Glyma.18G228100 hypothetical protein AT4G23010:UTR2:UDP-galactose transporter 2 1Chr18:51724379–51728152 (+)5.329e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.598e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.969e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.969e-16
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.338e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.936e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.106e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)2.974e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)4.57e-11