Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10575

Metabolite ID
P10575
Deionized mass
670.1685 Da
Average m/z
671.1708
Average RT
10.4927
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)3.251e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.089e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.762e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)6.297e-12
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 2Chr07:6364435–6372387 (-)1.531e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.936e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.02e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)6.006e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.554e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)3.488e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.373e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)8.921e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.622e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.27e-13
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.618e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.405e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.163e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.597e-15
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.236e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.887e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.236e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.236e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.887e-11
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)6.761e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.936e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.936e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.936e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.936e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.201e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.201e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.683e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.683e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.586e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.586e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.935e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.935e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.339e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.569e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.006e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.325e-12
Glyma.13G053400 hypothetical protein AT5G15640:AT5G15640:Mitochondrial substrate carrier family protein 1Chr13:15070294–15076224 (+)5.729e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)1.627e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.142e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.142e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.142e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.448e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.554e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.57e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.762e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.763e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.235e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.299e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.057e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.057e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)6.297e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.554e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.554e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.674e-12
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)2.372e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.47e-17
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.656e-15
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.013e-21
Glyma.20G019900 hypothetical protein NA 1Chr20:2058888–2064537 (+)3.213e-11