Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10558

Metabolite ID
P10558
Deionized mass
210.0872 Da
Average m/z
211.0943
Average RT
10.4845
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.23e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)9.746e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)9.643e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)5.655e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.827e-12
Glyma.08G338900 hypothetical protein NA 2Chr08:45536950–45543029 (-)2.186e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.287e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.179e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.41e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.41e-14
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.45e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.965e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)9.419e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.973e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.235e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.115e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.787e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.787e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.883e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.649e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.649e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.649e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.773e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)8.545e-11
Glyma.05G161500 GSTU17 NA 1Chr05:35306224–35308154 (+)4.599e-11
Glyma.05G166800 SHOOT1 SHOOT1 protein AT1G55480:ZKT:protein containing PDZ domain, a K-box domain, and a TPR region 1Chr05:35731069–35735416 (+)9.169e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.038e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)5.993e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.766e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.654e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.562e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.654e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.654e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.562e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.105e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.827e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.827e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.827e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.827e-12
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)7.322e-11
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)3.785e-11
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)3.785e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.085e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.085e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.085e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.085e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.16e-14
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.192e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.287e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.179e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.992e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.769e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.607e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.607e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.223e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.23e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.23e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.23e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.23e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.775e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)9.643e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)9.643e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.061e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.206e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.362e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.091e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.091e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)6.045e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.017e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.572e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.089e-12