Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10500

Metabolite ID
P10500
Deionized mass
265.1265 Da
Average m/z
266.1338
Average RT
10.4596
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.553e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.011e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.366e-12
Glyma.09G210200 hypothetical protein AT1G31940:AT1G31940:cystic fibrosis transmembrane conductance regulator 2Chr09:43432969–43437575 (-)4.965e-11
Glyma.10G038400 hypothetical protein NA 2Chr10:3400759–3409406 (+)2.131e-11
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 2Chr19:860974–865476 (+)2.525e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.035e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.553e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.641e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.635e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.627e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.627e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.634e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.668e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)4.588e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.682e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.009e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.062e-11
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)6.235e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)1.299e-11
Glyma.09G210800 hypothetical protein AT1G32050:SCAMP5:SCAMP family protein 1Chr09:43476243–43482337 (+)8.796e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.487e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.562e-13
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)7.189e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.256e-11
Glyma.10G038200 hypothetical protein NA 1Chr10:3394443–3395342 (-)7.597e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)6.187e-14
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)3.22e-12
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)3.22e-12
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)3.22e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.064e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)9.013e-14
Glyma.14G083200 hypothetical protein NA 1Chr14:7249145–7256947 (-)6.506e-11
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)2.503e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.716e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.588e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)2.005e-12
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)9.036e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.453e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.147e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.009e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)6.553e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)7.987e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)7.987e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.395e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)4.395e-11
Glyma.18G027300 hypothetical protein NA 1Chr18:2049280–2053959 (-)1.999e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)2.042e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)4.288e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.389e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)9.691e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)7.461e-13
Glyma.19G011000 hypothetical protein NA 1Chr19:1055394–1060028 (+)5.072e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.035e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.821e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.821e-17
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.162e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.132e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.519e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.125e-13
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)4.114e-11